PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G221800.1.p
Common NameGLYMA_06G221800, LOC100819868
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 220aa    MW: 24500.8 Da    PI: 8.2316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G221800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19654254
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                         +++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  Glyma.06G221800.1.p  6 KFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMS 54
                         89******9.**********8.....334*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-33563IPR001471AP2/ERF domain
CDDcd000187.61E-35665No hitNo description
SMARTSM003805.8E-40669IPR001471AP2/ERF domain
PROSITE profilePS5103221.944663IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-20664IPR016177DNA-binding domain
PfamPF008473.7E-12653IPR001471AP2/ERF domain
PRINTSPR003671.3E-10718IPR001471AP2/ERF domain
PRINTSPR003671.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MVQTRKFRGV RQRHWGSWVS EIRHPLLKRR VWLGTFETAE EAARAYDQAA ILMSGRNAKT  60
NFPIVQTPEG DPKTTLTPTD HETPSSSMTT SKELEEILHA KLRKCGKLPS PSMTCLRLDP  120
ENSHIGVWQK RAGQHSDSNW VMMVPPLGKK GGANEGGTGD GSCSNNPSSF SKCDPAPQVV  180
RQELLRTEMD EEERIALQMI EELLGRNCPI TSPSFNNLY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-16564161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582094.11e-165PREDICTED: ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI336e-72WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0B2P3A51e-165A0A0B2P3A5_GLYSO; Ethylene-responsive transcription factor WIN1
TrEMBLK7KWK81e-165K7KWK8_SOYBN; Uncharacterized protein
STRINGGLYMA06G29110.21e-164(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.16e-62ERF family protein